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Development and employment of untargeted and targeted tools for virus detection in the frame of water-based epidemiology

Author(s): Olivera Maksimović (Author), Jon Gutiérrez-Aguirre (Supervisor), Denis Kutnjak (Co-Supervisor)

Year: 2023

Type: Doctoral dissertation

Traditional methods of studying viruses are limited in their ability to detect novel pathogens, but recent advances in high-throughput sequencing (HTS) are changing that. HTS allows researchers to probe deeply into the virome of various hosts and environments, identifying known and unknown viral species. However, a targeted approach, like quantitative …

Unravelling the molecular mechanisms of plant-pathogen interactions in grapevine and potato through functional analysis

Author(s): Špela Tomaž (Author), Anna Coll (Supervisor)

Year: 2022

Type: Doctoral dissertation

Plants are constantly exposed to various environmental stressors. Pathogen infections causing disease can affect economically important crops and impact global food production. To counter disease development and spread, it is imperative that we acquire a thorough knowledge of its pathogenesis, as well as of the mechanisms underlying plant immune response. …

Diversity of viruses infecting tomato and weed plants in agroecosystems

Author(s): Mark Paul Selda Rivarez (Author), Denis Kutnjak (Supervisor), Maja Ravnikar (Co-Supervisor)

Year: 2022

Type: Doctoral dissertation

Viruses, satellite viruses, viroids, virusoids, and satellite nucleic acids (herewith, referred to collectively or in part as ‘viruses’) comprise the virosphere and are perhaps the most diverse and abundant, yet still under-sampled, microbes on Earth. They are primarily regarded as pathogens or parasites of their eukaryotic or prokaryotic hosts. In …