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Computational investigation of protein-RNA interactions detected by CLIP, their specificity and dynamics in embryonic development

Author(s): Klara Kuret (Author), Jernej Ule (Supervisor), Miha Modic (Co-Supervisor)

Year: 2024

Type: Doctoral dissertation

RNA molecules dynamically interact with RNA-binding proteins (RBPs), which control various aspects of RNA fate, such as its processing, localisation, and stability. Intricate networks of protein-RNA interactions thereby regulate gene expression and have a profound effect on downstream cellular processes. Most RBPs recognise specific motifs on their bound RNAs, characterised …

Characterization of constrained continuous multiobjective optimization problems

Author(s): Aljoša Vodopija (Author), Bogdan Filipič (Supervisor)

Year: 2024

Type: Doctoral dissertation

Despite the large volume of recently published papers in the field of constrained multiobjective optimization, the understanding and characterization of constrained multiobjective optimization problems (CMOPs) for benchmarking multiobjective evolutionary algorithms (MOEAs) and the related constraint handling techniques (CHTs) remain unsatisfactory. Therefore, selecting appropriate CMOPs for benchmarking is challenging and lacks …

Demand forecasting with machine learning methods

Author(s): Jose Martin Rožanec (Author), Dunja Mladenić (Supervisor), Blaž Fortuna (Co-Supervisor)

Year: 2023

Type: Doctoral dissertation

This thesis examines how machine learning can be applied in demand forecasting. In particular, it describes a novel approach toward lumpy and intermittent demand forecasting. It advocates using a two-fold model for forecasting lumpy (irregular demand occurrence, strong demand size variability) and intermittent (irregular demand occurrence, little demand size variability) …

Computational modelling of information dynamics in children’s melody perception

Author(s): Lorena Mihelač (Author), Geraint A. Wiggins (Supervisor), Janez Povh (Co-Supervisor)

Year: 2023

Type: Doctoral dissertation

This thesis focuses on the information dynamics of children’s melody and, more specifically, on modeling children’s perception of melodic surface. The topic of children’s melody has not received much attention in the past, and there are currently no clear definitions of what exactly a “children’s melody” is. As neither children’s …

Identification of indoor radio environment properties based on channel state information using machine learning approaches

Author(s): Teodora Kocevska (Author), Andrej Hrovat (Supervisor), Aleksandra Rashkovska Koceva (Co-Supervisor)

Year: 2023

Type: Doctoral dissertation

Characterization of the indoor radio environment (RE) is a prerequisite for advances in the design and optimization of next-generation indoor wireless networks and for the construction of a digital twin of the building. The need for comprehensive and accurate indoor characterization will be evident in the future hyper-connected mixed real-virtual …

Towards understanding the impact of problem landscapes in numerical black-box optimization

Author(s): Urban Škvorc (Author), Peter Korošec (Supervisor), Tome Eftimov (Co-Supervisor)

Year: 2023

Type: Doctoral dissertation

In optimization, it is well known that algorithm performance is dependent on the problem being solved. As a consequence of this, achieving good optimization results requires correctly matching an optimization problem to a specific optimization algorithm that performs well on that problem. For this to be possible, knowledge of both …

Exploiting domain knowledge in predictive learning from food and nutrition data

Author(s): Gordana Ispirova (Author), Barbara Koroušić Seljak (Supervisor), Tome Eftimov (Co-Supervisor)

Year: 2022

Type: Doctoral dissertation

Human knowledge about food and nutrition has evolved drastically with time. With food and nutrition-related data being mass produced and easily accessible, the next step is to use Artificial Intelligence (AI) to translate data into knowledge. The majority of AI research is model-driven, and classical Machine Learning (ML) pipelines concentrate …

Combining neural and symbolic representations in natural language processing

Author(s): Matej Martinc (Author), Senja Pollak (Supervisor)

Year: 2022

Type: Doctoral dissertation

The thesis addresses a novel representation learning framework, combining neural and symbolic text representations, and demonstrates its utility for tackling diverse natural language processing problems. The proposed approach, avoiding the deficiencies of purely symbolic and purely neural methods, can be applied for the generation of efficient text representations. Its usefulness …

User experience evaluation of novel air quality sensing technologies for citizen engagement in environmental health studies

Author(s): Johanna Amalia Robinson (Author), David Kocman (Supervisor), Ayelet Baram-Tsabari (Co-Supervisor)

Year: 2022

Type: Doctoral dissertation

The use of low-cost sensing technologies increasingly used in participatory environmental health studies brings both opportunities and challenges. While previous research mostly focused on technical aspects, this thesis brings participants to the foreground and articulates their experiences. It aims to evaluate if low-cost sensing technologies are fitfor- purpose in environmental …

Scalable neuro-symbolic machine learning

Author(s): Blaž Škrlj (Author), Nada Lavrač (Supervisor)

Year: 2022

Type: Doctoral dissertation

With the resurgence of neural network-based learning in the last decade, machine learning methods are becoming critical components of many real-life intelligent systems. However, while being able to learn effectively and at scale, such systems are often non-interpretable and unable to exploit existing symbolic background knowledge. The paradigm that offers …