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Characterization of plant viromes using different viral nucleic acids enrichment strategies and high-throughput sequencing platforms

Author(s): Anja Pecman (Author), Maja Ravnikar (Supervisor), Ion Gutiérrez Aguirre (Co-Supervisor)

Year: 2022

Type: Doctoral dissertation

Plant viruses are very important plant pathogens, causing economic losses by infecting cultivated plants, causing diseases, and consequently reducing crop quality and quantity. In recent years, the development of high throughput sequencing (HTS) technologies has dramatically broadened the possibilities for plant virus research and diagnostics, enabling the discovery of new …

The use of high-throughput sequencing for detection of viral sequences in complex samples from environment and industry

Author(s): Katarina Bačnik (Author), Maja Ravnikar (Supervisor), Denis Kutnjak (Co-Supervisor)

Year: 2022

Type: Doctoral dissertation

Metagenomics based on high throughput sequencing (HTS) has opened a new era of discovery and genomic characterization of viruses associated with a given host or environment. The search for novel viral sequences provides an excellent opportunity to improve early detection of pathogens, and to predict viral hosts and environmental reservoirs …